Mechanism of action of Xiaochaihu decoction in the treatment of hepatitis B based on network pharmacology
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摘要:
目的 通过网络药理学研究小柴胡汤治疗乙型肝炎的作用机制。 方法 利用TCMSP数据库收集小柴胡汤中7味中药的主要化学成分和作用靶点;通过GeneCards和OMIM数据库获取乙型肝炎相关靶点,利用STRING在线平台构建潜在靶点PPI网络并利用R语言获取GO功能富集分析及KEGG通路分析;运用Cytoscape3.7.2构建“活性成分-核心靶点”网络并对网络进行拓扑分析;最后利用AutoDock vina等软件对网络中度值较高的活性成分与核心靶点进行分子对接和可视化分析。 结果 筛选到小柴胡汤中槲皮素、山奈酚、汉黄芩素、柚皮素等193种主要化学成分和247个相关靶点,其中关键靶点有RELA、MAPK1、TP53、ESR1、EGFR、AKT1等;GO功能富集分析共得到2612条富集结果,主要涉及细胞对化学应激的反应、对药物的反应、氧化应激反应、对脂多糖的反应等生物过程的调节;KEGG通路分析共得到174条通路富集结果,主要涉及乙型肝炎、PI3K-AKT信号通路、MAPK信号通路等;分子对接结果显示主要活性成分与核心靶点的结合力均较强,蛋白结晶复合物构象稳定。 结论 研究初步表明了小柴胡汤通过多成分、多靶点、多通路发挥治疗乙型肝炎的作用机制。 -
关键词:
- 乙型肝炎 /
- 小柴胡汤 /
- 网络药理学 /
- 药理作用分子作用机制
Abstract:Objective To investigate the mechanism of action of Xiaochaihu decoction in the treatment of hepatitis B based on network pharmacology. Methods The TCMSP database was used to obtain the main chemical components and action targets of the seven traditional Chinese medicines in Xiaochaihu decoction; the GeneCards and OMIM databases were used to obtain the targets associated with hepatitis B; the STRING online platform was used to construct a PPI network of potential targets, and R language was used to perform gene ontology (GO) functional enrichment analysis and KEGG pathway analysis; Cytoscape 3.7.2 was used to construct an "active component-core target" network and perform a topology analysis of this network; AutoDock vina and related software were used to perform molecular docking and visualized analysis of the active components with high value and the core targets in the network. Results A total of 193 main chemical components (including quercetin, kaempferol, wogonin, and naringenin) and 247 related targets were screened out, among which the key targets included RELA, MAPK1, TP53, ESR1, EGFR, and AKT1. A total of 2612 enrichment items were obtained by GO functional enrichment analysis, which were mainly involved in regulating the biological processes such as cell response to chemical stress, response to drugs, oxidative stress response, and lipopolysaccharide response. A total of 174 pathways were obtained by the KEGG pathway analysis, mainly involving hepatitis B, PI3K-AKT signaling pathway, and MAPK signaling pathway. Molecular docking results showed that the main active components had strong binding force to core targets, and the protein crystal complex had a stable conformation. Conclusion This study preliminarily shows that Xiaochaihu decoction exerts a therapeutic effect on hepatitis B through multiple components, targets, and pathways. -
表 1 小柴胡汤部分活性成分信息
MOL ID MOL Name OB DL 来源药物 MOL000354 Isorhamnetin 49.6 0.31 柴胡,甘草 MOL000359 Sitosterol 36.91 0.75 黄芩,甘草 MOL000422 Kaempferol 41.88 0.24 柴胡,人参,甘草 MOL000098 Quercetin 46.43 0.28 柴胡,大枣,甘草 MOL000449 Stigmasterol 43.83 0.76 柴胡,半夏,人参,黄芩,甘草 MOL000358 Beta-sitosterol 36.91 0.75 黄芩,人参,半夏,生姜,甘草 MOL005360 Malkangunin 57.71 0.63 人参,甘草 MOL000787 Fumarine 59.26 0.83 人参,大枣 MOL002714 Baicalein 33.52 0.21 半夏,黄芩 MOL002776 Baicalin 40.12 0.75 柴胡,半夏 MOL002879 Diop 43.59 0.39 黄芩,人参 MOL003896 7-Methoxy-2-methyl isoflavone 42.56 0.2 甘草 MOL000497 Licochalcone A 40.79 0.29 甘草 MOL000392 Formononetin 69.67 0.21 甘草 MOL004328 Naringenin 59.29 0.21 甘草 MOL012940 Spiradine A 113.52 0.61 甘草 MOL008034 21302-79-4 73.52 0.77 大枣 MOL008647 Moupinamide 86.71 0.26 大枣 MOL002773 Beta-carotene 37.18 0.58 大枣 MOL000096 (-)-catechin 49.68 0.24 大枣 MOL012940 Spiradine A 113.52 0.78 大枣 MOL006936 10, 13-eicosadienoic 39.99 0.2 半夏 MOL006937 12, 13-epoxy-9-hydroxynonadeca-7, 10-dienoic acid 42.15 0.24 半夏 MOL006957 (3S, 6S)-3-(benzyl)-6-(4-hydroxybenzyl) piperazine-2, 5-quinone 46.89 0.27 半夏 MOL003578 Cycloartenol 38.69 0.78 半夏 MOL006967 Beta-D-ribofuranoside, xanthine-9 44.72 0.21 半夏 MOL006129 6-methylgingediacetate2 48.73 0.32 生姜 MOL001771 Poriferast-5-en-3beta-ol 36.91 0.75 生姜 MOL008698 Dihydrocapsaicin 47.07 0.19 生姜 MOL004609 Areapillin 48.96 0.41 柴胡 MOL013187 Cubebin 57.13 0.64 柴胡 MOL004624 Longikaurin A 47.72 0.53 柴胡 MOL004628 Octalupine 47.82 0.28 柴胡 MOL004644 Sainfuran 79.91 0.23 柴胡 MOL003648 Inermin 65.83 0.54 人参 MOL005308 Aposiopolamine 66.65 0.22 人参 MOL005314 Celabenzine 101.88 0.49 人参 MOL005321 Frutinone A 65.9 0.34 人参 MOL005356 Girinimbin 61.22 0.31 人参 MOL000173 Wogonin 30.68 0.23 黄芩 MOL002915 Salvigenin 49.07 0.33 黄芩 MOL002927 Skullcapflavone Ⅱ 69.51 0.44 黄芩 MOL002932 Panicolin 76.26 0.29 黄芩 MOL002934 Neobaicalein 104.34 0.44 黄芩 表 2 小柴胡汤度值前10位化学成分基本信息
NO. MOL ID MOL Name 化学式 Degree 来源药物 1 MOL000098 槲皮素(quercetin) C15H10O7 100 柴胡,甘草,大枣 2 MOL000422 山奈酚(kaempferol) C15H10O6 32 柴胡,甘草 3 MOL000173 汉黄芩素(wogonin) C16H12O5 31 黄芩 4 MOL004328 柚皮素(naringenin) C15H12O5 25 甘草 5 MOL000392 芒柄花素(formononetin) C16H12O4 20 甘草 6 MOL000497 甘草酮(licochalcone A) C21H22O4 20 甘草 7 MOL002714 黄芩素(baicalein) C15H10O5 19 黄芩,半夏 8 MOL000354 异鼠李素(isorhamnetin) C16H12O7 18 柴胡,甘草 9 MOL003896 7-甲氧基-2-甲基异黄酮
(7-Methoxy-2-methyl isoflavone)C17H13NO5 18 甘草 10 MOL002773 β-胡萝卜素(beta-carotene) C40H56 18 大枣 表 3 关键化合物与核心靶点分子对接
有效成分 结合能(kcal/mol) MAPK1 RELA TP53 ESR1 槲皮素(quercetin) -7.4 -7.8 -7.0 -8.6 山奈酚(kaempferol) -7.2 -7.1 -8.1 -7.2 汉黄芩素(wogonin) -9.4 -8.3 -8.9 -7.5 柚皮素(naringenin) -8.6 -7.7 -7.8 -9.1 -
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